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Pruning objects | Cluster Administration | OKD 3.11
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Pruning objects

Overview

Over time, API objects created in OKD can accumulate in the etcd data store through normal user operations, such as when building and deploying applications.

As an administrator, you can periodically prune older versions of objects from your OKD instance that are no longer needed. For example, by pruning images you can delete older images and layers that are no longer in use, but are still taking up disk space.

Basic prune operations

The CLI groups prune operations under a common parent command.

$ oc adm prune <object_type> <options>

This specifies:

  • The <object_type> to perform the action on, such as groups, builds, deployments, or images.

  • The <options> supported to prune that object type.

Pruning groups

To prune groups records from an external provider, administrators can run the following command:

$ oc adm prune groups --sync-config=path/to/sync/config [<options>]
Table 1. Prune groups CLI configuration options
Options Description

--confirm

Indicate that pruning should occur, instead of performing a dry-run.

--blacklist

Path to the group blacklist file. See Syncing Groups With LDAP for the blacklist file structure.

--whitelist

Path to the group whitelist file. See Syncing Groups With LDAP for the whitelist file structure.

--sync-config

Path to the synchronization configuration file. See Configuring LDAP Sync for the structure of this file.

To see the groups that the prune command deletes:

$ oc adm prune groups --sync-config=ldap-sync-config.yaml

To perform the prune operation:

$ oc adm prune groups --sync-config=ldap-sync-config.yaml --confirm

Pruning deployments

In order to prune deployments that are no longer required by the system due to age and status, administrators may run the following command:

$ oc adm prune deployments [<options>]
Table 2. Prune deployments CLI configuration options
Option Description

--confirm

Indicate that pruning should occur, instead of performing a dry-run.

--orphans

Prune all deployments whose deployment config no longer exists, status is complete or failed, and replica count is zero.

--keep-complete=<N>

Per deployment config, keep the last N deployments whose status is complete and replica count is zero. (default 5)

--keep-failed=<N>

Per deployment config, keep the last N deployments whose status is failed and replica count is zero. (default 1)

--keep-younger-than=<duration>

Do not prune any object that is younger than <duration> relative to the current time. (default 60m) Valid units of measurement include nanoseconds (ns), microseconds (us), milliseconds (ms), seconds (s), minutes (m), and hours (h).

To see what a pruning operation would delete:

$ oc adm prune deployments --orphans --keep-complete=5 --keep-failed=1 \
    --keep-younger-than=60m

To actually perform the prune operation:

$ oc adm prune deployments --orphans --keep-complete=5 --keep-failed=1 \
    --keep-younger-than=60m --confirm

Pruning builds

In order to prune builds that are no longer required by the system due to age and status, administrators may run the following command:

$ oc adm prune builds [<options>]
Table 3. Prune builds CLI configuration options
Option Description

--confirm

Indicate that pruning should occur, instead of performing a dry-run.

--orphans

Prune all builds whose build config no longer exists, status is complete, failed, error, or canceled.

--keep-complete=<N>

Per build config, keep the last N builds whose status is complete. (default 5)

--keep-failed=<N>

Per build config, keep the last N builds whose status is failed, error, or canceled (default 1)

--keep-younger-than=<duration>

Do not prune any object that is younger than <duration> relative to the current time. (default 60m)

To see what a pruning operation would delete:

$ oc adm prune builds --orphans --keep-complete=5 --keep-failed=1 \
    --keep-younger-than=60m

To actually perform the prune operation:

$ oc adm prune builds --orphans --keep-complete=5 --keep-failed=1 \
    --keep-younger-than=60m --confirm

Developers can enable automatic build pruning by modifying their build configuration.

Pruning images

In order to prune images that are no longer required by the system due to age, status, or exceed limits, administrators may run the following command:

$ oc adm prune images [<options>]

Currently, to prune images you must first log in to the CLI as a user with an access token. The user must also have the cluster role system:image-pruner or greater (for example, cluster-admin).

Pruning images removes data from the integrated registry unless --prune-registry=false is used. For this operation to work properly, ensure your registry is configured with storage:delete:enabled set to true.

Pruning images with the --namespace flag does not remove images, only image streams. Images are non-namespaced resources. Therefore, limiting pruning to a particular namespace makes it impossible to calculate their current usage.

By default the integrated registry caches blobs metadata to reduce the number of requests to storage, and increase the speed of processing the request. Pruning does not update the integrated registry cache. Images pushed after pruning that contain pruned layers will be broken, because the pruned layers that have metadata in the cache will not be pushed. Therefore it is necessary to clear the cache after pruning. This can be accomplished by redeploying the registry:

$ oc rollout latest dc/docker-registry

If the integrated registry uses a redis cache, you need to clean the database manually.

If redeploying the registry after pruning is not an option, then you must permanently disable the cache.

Table 4. Prune images CLI configuration options
Option Description

--all

Include images that were not pushed to the registry, but have been mirrored by pullthrough. This is on by default. To limit the pruning to images that were pushed to the integrated registry, pass --all=false.

--certificate-authority

The path to a certificate authority file to use when communicating with the OKD-managed registries. Defaults to the certificate authority data from the current user’s configuration file. If provided, secure connection will be initiated.

--confirm

Indicate that pruning should occur, instead of performing a dry-run. This requires a valid route to the integrated container image registry. If this command is run outside of the cluster network, the route needs to be provided using --registry-url.

--force-insecure

Use caution with this option. Allow an insecure connection to the Docker registry that is hosted via HTTP or has an invalid HTTPS certificate. See Using Secure or Insecure Connections for more information.

--keep-tag-revisions=<N>

For each image stream, keep up to at most N image revisions per tag. (default 3)

--keep-younger-than=<duration>

Do not prune any image that is younger than <duration> relative to the current time. Do not prune any image that is referenced by any other object that is younger than <duration> relative to the current time. (default 60m)

--prune-over-size-limit

Prune each image that exceeds the smallest limit defined in the same project. This flag cannot be combined with --keep-tag-revisions nor --keep-younger-than.

--registry-url

The address to use when contacting the registry. The command will attempt to use a cluster-internal URL determined from managed images and image streams. In case it fails (the registry cannot be resolved or reached), an alternative route that works needs to be provided using this flag. The registry host name may be prefixed by https:// or http:// which will enforce particular connection protocol.

--prune-registry

In conjunction with the conditions stipulated by the other options, this option controls whether the data in the registry corresponding to the OKD Image API Objects is pruned. By default, image pruning processes both the Image API Objects and corresponding data in the registry. This options is useful when you are only concerned with removing etcd content, possibly to reduce the number of image objects, but are not concerned with cleaning up registry storage; or intend to do that separately by Hard Pruning the Registry, possibly during an appropriate maintenance window for the registry.

Image prune conditions

  • Remove any image "managed by OKD" (images with the annotation openshift.io/image.managed) that was created at least --keep-younger-than minutes ago and is not currently referenced by:

    • any pod created less than --keep-younger-than minutes ago.

    • any image stream created less than --keep-younger-than minutes ago.

    • any running pods.

    • any pending pods.

    • any replication controllers.

    • any deployment configurations.

    • any build configurations.

    • any builds.

    • the --keep-tag-revisions most recent items in stream.status.tags[].items.

  • Remove any image "managed by OKD" (images with the annotation openshift.io/image.managed) that is exceeding the smallest limit defined in the same project and is not currently referenced by:

    • any running pods.

    • any pending pods.

    • any replication controllers.

    • any deployment configurations.

    • any build configurations.

    • any builds.

  • There is no support for pruning from external registries.

  • When an image is pruned, all references to the image are removed from all image streams that have a reference to the image in status.tags.

  • Image layers that are no longer referenced by any images are removed as well.

--prune-over-size-limit cannot be combined with --keep-tag-revisions nor --keep-younger-than flags. Doing so will return an information that this operation is not allowed.

Separating the removal of OKD Image API Objects and Image data from the Registry by using --prune-registry=false followed by Hard Pruning the Registry narrows some timing windows, and is safer when compared to trying to prune both through one command. However, timing windows are not completely removed.

For example, you can still create a Pod referencing an Image as pruning identifies that Image for pruning. You should still keep track of an API Object created during the pruning operations that might reference Images, so you can mitigate any references to deleted content.

Also, keep in mind that re-doing the pruning without the --prune-registry option or with --prune-registry=true will not lead to pruning the associated storage in the image registry for images previously pruned by --prune-registry=false. Any images that were pruned with --prune-registry=false can only be deleted from registry storage by Hard Pruning the Registry.

To see what a pruning operation would delete:

  1. Keeping up to three tag revisions, and keeping resources (images, image streams and pods) younger than sixty minutes:

    $ oc adm prune images --keep-tag-revisions=3 --keep-younger-than=60m

  2. Pruning every image that exceeds defined limits:

    $ oc adm prune images --prune-over-size-limit

To actually perform the prune operation for the previously mentioned options accordingly:

$ oc adm prune images --keep-tag-revisions=3 --keep-younger-than=60m --confirm

$ oc adm prune images --prune-over-size-limit --confirm

Using secure or insecure connections

The secure connection is the preferred and recommended approach. It is done over HTTPS protocol with a mandatory certificate verification. The prune command always attempts to use it if possible. If not possible, in some cases it can fall-back to insecure connection, which is dangerous. In this case, either certificate verification is skipped or plain HTTP protocol is used.

The fall-back to insecure connection is allowed in the following cases unless --certificate-authority is specified:

  1. The prune command is run with the --force-insecure option.

  2. The provided registry-url is prefixed with the http:// scheme.

  3. The provided registry-url is a local-link address or localhost.

  4. The configuration of the current user allows for an insecure connection. This may be caused by the user either logging in using --insecure-skip-tls-verify or choosing the insecure connection when prompted.

If the registry is secured by a certificate authority different from the one used by OKD, it needs to be specified using the --certificate-authority flag. Otherwise, the prune command will fail with an error similar to those listed in Using the Wrong Certificate Authority or Using an Insecure Connection Against a Secured Registry.

Image pruning problems

Images not being pruned

If your images keep accumulating and the prune command removes just a small portion of what you expect, ensure that you understand the conditions that must apply for an image to be considered a candidate for pruning.

Especially ensure that images you want removed occur at higher positions in each tag history than your chosen tag revisions threshold. For example, consider an old and obsolete image named sha:abz. By running the following command in namespace N, where the image is tagged, you will see the image is tagged three times in a single image stream named myapp:

$ image_name="sha:abz"
$ oc get is -n openshift -o go-template='{{range $isi, $is := .items}}{{range $ti, $tag := $is.status.tags}}{{range $ii, $item := $tag.items}}{{if eq $item.image "'$image_name'"}}{{$is.metadata.name}}:{{$tag.tag}} at position {{$ii}} out of {{len $tag.items}}
{{end}}{{end}}{{end}}{{end}}' # Before this place {{end}}{{end}}{{end}}{{end}}, use new line
myapp:v2 at position 4 out of 5
myapp:v2.1 at position 2 out of 2
myapp:v2.1-may-2016 at position 0 out of 1

When default options are used, the image will not ever be pruned because it occurs at position 0 in a history of myapp:v2.1-may-2016 tag. For an image to be considered for pruning, the administrator must either:

  1. Specify --keep-tag-revisions=0 with the oc adm prune images command.

    This action will effectively remove all the tags from all the namespaces with underlying images, unless they are younger or they are referenced by objects younger than the specified threshold.

  2. Delete all the istags where the position is below the revision threshold, which means myapp:v2.1 and myapp:v2.1-may-2016.

  3. Move the image further in the history, either by running new builds pushing to the same istag, or by tagging other image. Unfortunately, this is not always desirable for old release tags.

Tags having a date or time of a particular image’s build in their names should be avoided, unless the image needs to be preserved for undefined amount of time. Such tags tend to have just one image in its history, which effectively prevents them from ever being pruned. Learn more about istag naming.

Using a secure connection against insecure registry

If you see a message similar to the following in the output of the oc adm prune images, then your registry is not secured and the oc adm prune images client will attempt to use secure connection:

error: error communicating with registry: Get https://172.30.30.30:5000/healthz: http: server gave HTTP response to HTTPS client

  1. The recommened solution is to secure the registry. If that is not desired, you can force the client to use an insecure connection by appending --force-insecure to the command (not recommended).

Using an insecure connection against a secured registry

If you see one of the following errors in the output of the oc adm prune images command, it means that your registry is secured using a certificate signed by a certificate authority other than the one used by oc adm prune images client for connection verification.

error: error communicating with registry: Get http://172.30.30.30:5000/healthz: malformed HTTP response "\x15\x03\x01\x00\x02\x02"
error: error communicating with registry: [Get https://172.30.30.30:5000/healthz: x509: certificate signed by unknown authority, Get http://172.30.30.30:5000/healthz: malformed HTTP response "\x15\x03\x01\x00\x02\x02"]

By default, the certificate authority data stored in user’s configuration file are used — the same for communication with the master API.

Use the --certificate-authority option to provide the right certificate authority for the container image registry server.

Using the wrong certificate authority

The following error means that the certificate authority used to sign the certificate of the secured container image registry is different than the authority used by the client.

error: error communicating with registry: Get https://172.30.30.30:5000/: x509: certificate signed by unknown authority

Make sure to provide the right one with the flag --certificate-authority.

As a work-around, the --force-insecure flag can be added instead (not recommended).

Hard pruning the registry

The OpenShift Container Registry can accumulate blobs that are not referenced by the OKD cluster’s etcd. The basic Pruning Images procedure, therefore, is unable to operate on them. These are called orphaned blobs.

Orphaned blobs can occur from the following scenarios:

  • Manually deleting an image with oc delete image <sha256:image-id> command, which only removes the image from etcd, but not from the registry’s storage.

  • Pushing to the registry initiated by docker daemon failures, which causes some blobs to get uploaded, but the image manifest (which is uploaded as the very last component) does not. All unique image blobs become orphans.

  • OKD refusing an image because of quota restrictions.

  • The standard image pruner deleting an image manifest, but is interrupted before it deletes the related blobs.

  • A bug in the registry pruner, which fails to remove the intended blobs, causing the image objects referencing them to be removed and the blobs becoming orphans.

Hard pruning the registry, a separate procedure from basic image pruning, allows you to remove orphaned blobs. You should hard prune if you are running out of storage space in your OpenShift Container Registry and believe you have orphaned blobs.

This should be an infrequent operation and is necessary only when you have evidence that significant numbers of new orphans have been created. Otherwise, you can perform standard image pruning at regular intervals, for example, once a day (depending on the number of images being created).

To hard prune orphaned blobs from the registry:

  1. Log in: Log in using the CLI as a user with an access token.

  2. Run a basic image prune: Basic image pruning removes additional images that are no longer needed. The hard prune does not remove images on its own. It only removes blobs stored in the registry storage. Therefore, you should run this just before the hard prune.

    See Pruning Images for steps.

  3. Switch the registry to read-only mode: If the registry is not running in read-only mode, any pushes happening at the same time as the prune will either:

    • fail and cause new orphans, or

    • succeed although the images will not be pullable (because some of the referenced blobs were deleted).

    Pushes will not succeed until the registry is switched back to read-write mode. Therefore, the hard prune must be carefully scheduled.

    To switch the registry to read-only mode:

    1. Set the following environment variable:

      $ oc set env -n default \
    dc/docker-registry \
    'REGISTRY_STORAGE_MAINTENANCE_READONLY={"enabled":true}'

    2. By default, the registry should automatically redeploy when the previous step completes; wait for the redeployment to complete before continuing. However, if you have disabled these triggers, you must manually redeploy the registry so that the new environment variables are picked up:

      $ oc rollout -n default \
    latest dc/docker-registry

  4. Add the system:image-pruner role: The service account used to run the registry instances requires additional permissions in order to list some resources.

    1. Get the service account name:

      $ service_account=$(oc get -n default \
    -o jsonpath=$'system:serviceaccount:{.metadata.namespace}:{.spec.template.spec.serviceAccountName}\n' \
    dc/docker-registry)

    2. Add the system:image-pruner cluster role to the service account:

      $ oc adm policy add-cluster-role-to-user \
    system:image-pruner \
    ${service_account}

  5. (Optional) Run the pruner in dry-run mode: To see how many blobs would be removed, run the hard pruner in dry-run mode. No changes are actually made:

    $ oc -n default \
    exec -i -t "$(oc -n default get pods -l deploymentconfig=docker-registry \
    -o jsonpath=$'{.items[0].metadata.name}\n')" \
    -- /usr/bin/dockerregistry -prune=check

    Alternatively, to get the exact paths for the prune candidates, increase the logging level:

    $ oc -n default \
    exec "$(oc -n default get pods -l deploymentconfig=docker-registry \
      -o jsonpath=$'{.items[0].metadata.name}\n')" \
    -- /bin/sh \
    -c 'REGISTRY_LOG_LEVEL=info /usr/bin/dockerregistry -prune=check'
    Truncated sample output
    $ oc exec docker-registry-3-vhndw \
    -- /bin/sh -c 'REGISTRY_LOG_LEVEL=info /usr/bin/dockerregistry -prune=check'

time="2017-06-22T11:50:25.066156047Z" level=info msg="start prune (dry-run mode)" distribution_version="v2.4.1+unknown" kubernetes_version=v1.6.1+$Format:%h$ openshift_version=unknown
time="2017-06-22T11:50:25.092257421Z" level=info msg="Would delete blob: sha256:00043a2a5e384f6b59ab17e2c3d3a3d0a7de01b2cabeb606243e468acc663fa5" go.version=go1.7.5 instance.id=b097121c-a864-4e0c-ad6c-cc25f8fdf5a6
time="2017-06-22T11:50:25.092395621Z" level=info msg="Would delete blob: sha256:0022d49612807cb348cabc562c072ef34d756adfe0100a61952cbcb87ee6578a" go.version=go1.7.5 instance.id=b097121c-a864-4e0c-ad6c-cc25f8fdf5a6
time="2017-06-22T11:50:25.092492183Z" level=info msg="Would delete blob: sha256:0029dd4228961086707e53b881e25eba0564fa80033fbbb2e27847a28d16a37c" go.version=go1.7.5 instance.id=b097121c-a864-4e0c-ad6c-cc25f8fdf5a6
time="2017-06-22T11:50:26.673946639Z" level=info msg="Would delete blob: sha256:ff7664dfc213d6cc60fd5c5f5bb00a7bf4a687e18e1df12d349a1d07b2cf7663" go.version=go1.7.5 instance.id=b097121c-a864-4e0c-ad6c-cc25f8fdf5a6
time="2017-06-22T11:50:26.674024531Z" level=info msg="Would delete blob: sha256:ff7a933178ccd931f4b5f40f9f19a65be5eeeec207e4fad2a5bafd28afbef57e" go.version=go1.7.5 instance.id=b097121c-a864-4e0c-ad6c-cc25f8fdf5a6
time="2017-06-22T11:50:26.674675469Z" level=info msg="Would delete blob: sha256:ff9b8956794b426cc80bb49a604a0b24a1553aae96b930c6919a6675db3d5e06" go.version=go1.7.5 instance.id=b097121c-a864-4e0c-ad6c-cc25f8fdf5a6
...
Would delete 13374 blobs
Would free up 2.835 GiB of disk space
Use -prune=delete to actually delete the data

  6. Run the hard prune: Execute the following command inside one running instance of docker-registry pod to run the hard prune:

    $ oc -n default \
    exec -i -t "$(oc -n default get pods -l deploymentconfig=docker-registry -o jsonpath=$'{.items[0].metadata.name}\n')" \
    -- /usr/bin/dockerregistry -prune=delete
    Sample output
    $ oc exec docker-registry-3-vhndw \
    -- /usr/bin/dockerregistry -prune=delete

Deleted 13374 blobs
Freed up 2.835 GiB of disk space

  7. Switch the registry back to read-write mode: After the prune is finished, the registry can be switched back to read-write mode by executing:

    $ oc set env -n default dc/docker-registry REGISTRY_STORAGE_MAINTENANCE_READONLY-

Pruning Cron Jobs

Cron Jobs is a Technology Preview feature only.

Cron jobs can perform pruning of successful jobs, but might not handle properly, the failed jobs. Therefore, cluster administrator should perform regular cleanup of jobs, manually. We also recommend to restrict the access to cron jobs to a small group of trusted users and set appropriate quota to prevent the cron job from creating too many jobs and pods.